{
  "_id": "6a16d446acfb0bcc41d8e1ee",
  "Package": "transitreg",
  "Title": "Flexible Transition Models for Probabilistic Learning",
  "Version": "0.2-1",
  "Date": "2026-04-15",
  "Authors@R": "c(person(\ngiven = \"Nikolaus\",\nfamily = \"Umlauf\",\nrole = c(\"aut\", \"cre\"),\nemail = \"Nikolaus.Umlauf@uibk.ac.at\",\ncomment = c(ORCID = \"0000-0003-2160-9803\")\n),\nperson(\ngiven = \"Reto\",\nfamily = \"Stauffer\",\nrole = \"aut\",\nemail = \"Reto.Stauffer@uibk.ac.at\",\ncomment = c(ORCID = \"0000-0002-3798-5507\")\n))",
  "Description": "Provides infrastructure for estimating flexible transition\nmodels, supporting both count and continuous responses. For\ncontinuous responses, a slicing trick is applied to estimate\nfully probabilistic models.",
  "License": "GPL-2 | GPL-3",
  "VignetteBuilder": "quarto",
  "LazyData": "yes",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.3",
  "Repository": "https://retostauffer.r-universe.dev",
  "Date/Publication": "2026-05-27 09:16:50 UTC",
  "RemoteUrl": "https://github.com/retostauffer/transitreg",
  "RemoteRef": "HEAD",
  "RemoteSha": "9c22f038950802a422fde7bdce353bcbc32eb957",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-27 11:16:48 UTC",
    "User": "root"
  },
  "Author": "Nikolaus Umlauf [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-2160-9803>),\nReto Stauffer [aut] (ORCID: <https://orcid.org/0000-0002-3798-5507>)",
  "Maintainer": "Nikolaus Umlauf <Nikolaus.Umlauf@uibk.ac.at>",
  "MD5sum": "3360b6e73dd6f9364ef5a54f9d2c1bfc",
  "_user": "retostauffer",
  "_type": "src",
  "_file": "transitreg_0.2-1.tar.gz",
  "_fileid": "f5076a63bef279f8a4e8b423131d8df6371cabba99f32d4472e23870314e8e1f",
  "_filesize": 458017,
  "_sha256": "f5076a63bef279f8a4e8b423131d8df6371cabba99f32d4472e23870314e8e1f",
  "_created": "2026-05-27T11:16:48.000Z",
  "_published": "2026-05-27T11:23:50.420Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 78064999597,
      "time": 151,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7239017412"
    },
    {
      "job": 78064999719,
      "time": 162,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7239020961"
    },
    {
      "job": 78064999453,
      "time": 152,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7239017779"
    },
    {
      "job": 78064999616,
      "time": 158,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7239019748"
    },
    {
      "job": 78064999461,
      "time": 158,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7239035506"
    },
    {
      "job": 78064999450,
      "time": 257,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7239067061"
    },
    {
      "job": 78064999467,
      "time": 160,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7239036447"
    },
    {
      "job": 78064999604,
      "time": 301,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7239090893"
    },
    {
      "job": 78064477799,
      "time": 190,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7238967565"
    },
    {
      "job": 78064999456,
      "time": 112,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7239004973"
    },
    {
      "job": 78064999441,
      "time": 191,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7239030298"
    },
    {
      "job": 78064999594,
      "time": 155,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7239018793"
    },
    {
      "job": 78064999411,
      "time": 141,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7239014074"
    }
  ],
  "_buildurl": "https://github.com/r-universe/retostauffer/actions/runs/26507735997",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/retostauffer/transitreg",
  "_commit": {
    "id": "9c22f038950802a422fde7bdce353bcbc32eb957",
    "author": "Reto Stauffer <reto.stauffer@uibk.ac.at>",
    "committer": "Reto Stauffer <reto.stauffer@uibk.ac.at>",
    "message": "fix: Allowing the user to specify custom x limits when calling plot.Transition\n",
    "time": 1779873410
  },
  "_maintainer": {
    "name": "Nikolaus Umlauf",
    "email": "nikolaus.umlauf@uibk.ac.at",
    "login": "freezenik",
    "description": "",
    "uuid": 16672635,
    "orcid": "0000-0003-2160-9803"
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "mgcv",
      "role": "Depends"
    },
    {
      "package": "topmodels",
      "role": "Depends"
    },
    {
      "package": "distributions3",
      "role": "Depends"
    },
    {
      "package": "Formula",
      "role": "Imports"
    },
    {
      "package": "colorspace",
      "role": "Suggests"
    },
    {
      "package": "nnet",
      "role": "Suggests"
    },
    {
      "package": "quarto",
      "role": "Suggests"
    },
    {
      "package": "glmnet",
      "role": "Suggests"
    },
    {
      "package": "keras3",
      "role": "Suggests"
    },
    {
      "package": "tensorflow",
      "role": "Suggests"
    }
  ],
  "_owner": "retostauffer",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-25",
      "n": 1
    },
    {
      "week": "2025-27",
      "n": 5
    },
    {
      "week": "2025-30",
      "n": 3
    },
    {
      "week": "2025-37",
      "n": 1
    },
    {
      "week": "2025-38",
      "n": 1
    },
    {
      "week": "2025-39",
      "n": 1
    },
    {
      "week": "2026-18",
      "n": 1
    },
    {
      "week": "2026-21",
      "n": 4
    },
    {
      "week": "2026-22",
      "n": 2
    }
  ],
  "_tags": [],
  "_stars": 0,
  "_contributors": [
    {
      "user": "retostauffer",
      "count": 254,
      "uuid": 13628564
    },
    {
      "user": "freezenik",
      "count": 50,
      "uuid": 16672635
    },
    {
      "user": "bmueller5000",
      "count": 2,
      "uuid": 55247974
    }
  ],
  "_userbio": {
    "uuid": 13628564,
    "type": "user",
    "name": "Reto Stauffer",
    "description": "Working at the University of Innsbruck, Austria. Interests: data science, meteorology, atmospheric sciences, software development."
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/transitreg"
  },
  "_devurl": "https://github.com/retostauffer/transitreg",
  "_searchresults": 0,
  "_quarto": true,
  "_topics": [
    "quarto",
    "openmp"
  ],
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/transitreg.html",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "convert_tp",
    "dtransit",
    "ptransit",
    "qtransit",
    "rtransit",
    "survival",
    "Transition",
    "transitreg",
    "transitreg_glmnet",
    "transitreg_tensorflow"
  ],
  "_datasets": [
    {
      "name": "Shannon",
      "title": "Weather Data Shannon Airport (Ireland)",
      "object": "Shannon",
      "class": [
        "data.frame"
      ],
      "fields": [
        "date",
        "maxtp",
        "mintp",
        "rain",
        "sun"
      ],
      "rows": 29008,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "check_and_prepare_newdata",
      "title": "Check and Prepare Newdata",
      "topics": [
        "check_and_prepare_newdata"
      ]
    },
    {
      "page": "convert_tp",
      "title": "Converting between Densities, Probabilities, and Transition Probabilities",
      "topics": [
        "convert_tp"
      ]
    },
    {
      "page": "get_elementwise_colnames",
      "title": "Create Column Names for Return Matrix",
      "topics": [
        "get_elementwise_colnames"
      ]
    },
    {
      "page": "make_breaks",
      "title": "Create Breaks for (Pseudo-)bins",
      "topics": [
        "make_breaks"
      ]
    },
    {
      "page": "num2bin",
      "title": "Convert Numerics to Pseudo-Bins",
      "topics": [
        "num2bin"
      ]
    },
    {
      "page": "plot.transitreg",
      "title": "Plot Method for Transition Model Fits",
      "topics": [
        "plot.transitreg"
      ]
    },
    {
      "page": "predict.transitreg",
      "title": "Predict Method for Transition Model Fits",
      "topics": [
        "predict.transitreg"
      ]
    },
    {
      "page": "Shannon",
      "title": "Weather Data Shannon Airport (Ireland)",
      "topics": [
        "Shannon"
      ]
    },
    {
      "page": "survival",
      "title": "Creating Survival Object",
      "topics": [
        "as.character.survival",
        "format.survival",
        "print.survival",
        "survival",
        "[.survival"
      ]
    },
    {
      "page": "Transition",
      "title": "Creates a Transition Distribution",
      "concept": [
        "Transition distribution",
        "distributions"
      ],
      "topics": [
        "as.matrix.Transition",
        "c.Transition",
        "cdf.Transition",
        "dtransit",
        "is_continuous.Transition",
        "is_discrete.Transition",
        "log_pdf.Transition",
        "mean.Transition",
        "median.Transition",
        "pdf.Transition",
        "plot.Transition",
        "ptransit",
        "qtransit",
        "quantile.Transition",
        "random.Transition",
        "rtransit",
        "support.Transition",
        "Transition"
      ]
    },
    {
      "page": "transitreg",
      "title": "Transition Models Estimation",
      "topics": [
        "logLik.transitreg",
        "newresponse.transitreg",
        "prodist.transitreg",
        "transitreg"
      ]
    },
    {
      "page": "transitreg_detect_cores",
      "title": "Detect number of cores for OpenMP",
      "topics": [
        "transitreg_detect_cores"
      ]
    },
    {
      "page": "transitreg_get_number_of_cores",
      "title": "Get number of cores for OpenMP",
      "topics": [
        "transitreg_get_number_of_cores"
      ]
    },
    {
      "page": "transitreg_glmnet",
      "title": "Estimat Transition Probabilities via 'glmnet'",
      "topics": [
        "predict.transitreg_glmnet",
        "transitreg_glmnet"
      ]
    },
    {
      "page": "transitreg_tensorflow",
      "title": "Estimat Transition Probabilities via 'tensorflow'/'keras3'",
      "topics": [
        "predict.transitreg_tensorflow",
        "transitreg_tensorflow"
      ]
    },
    {
      "page": "transitreg_tmf",
      "title": "Transition Model Data Preparer",
      "concept": [
        "modeling",
        "transition"
      ],
      "topics": [
        "transitreg_tmf"
      ]
    }
  ],
  "_rundeps": [
    "cli",
    "colorspace",
    "cpp11",
    "distributions3",
    "farver",
    "Formula",
    "ggplot2",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "lifecycle",
    "Matrix",
    "mgcv",
    "nlme",
    "R6",
    "RColorBrewer",
    "rlang",
    "S7",
    "scales",
    "topmodels",
    "vctrs",
    "viridisLite",
    "withr"
  ],
  "_sysdeps": [
    {
      "shlib": "libgomp",
      "package": "libgomp1",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "openmp",
      "homepage": "http://gcc.gnu.org/",
      "description": "GCC OpenMP (GOMP) support library"
    }
  ],
  "_vignettes": [
    {
      "source": "transitreg.qmd",
      "filename": "transitreg.html",
      "title": "transitreg",
      "engine": "quarto::html",
      "headings": [],
      "created": "2025-01-17 13:57:02",
      "modified": "2025-04-17 18:56:54",
      "commits": 2
    }
  ],
  "_score": 3.255272505103306,
  "_indexed": true,
  "_nocasepkg": "transitreg",
  "_universes": [
    "retostauffer",
    "freezenik"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2-1",
      "date": "2026-05-27T11:19:09.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "9c22f038950802a422fde7bdce353bcbc32eb957",
      "fileid": "eb697b7a475d2033202f68be46482524268f2fc0693ad081e9b0a8f7903c2d8b",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/retostauffer/actions/runs/26507735997"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.2-1",
      "date": "2026-05-27T11:19:10.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "9c22f038950802a422fde7bdce353bcbc32eb957",
      "fileid": "298b728392e801b21bf0cde7509463d5fd515b7be7264fcaa10873d6717e672d",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/retostauffer/actions/runs/26507735997"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.2-1",
      "date": "2026-05-27T11:19:12.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "9c22f038950802a422fde7bdce353bcbc32eb957",
      "fileid": "67a1d0bc7a506e91bd32e62946458611fec196b777f3dd4c2e80ceb1467a46ed",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/retostauffer/actions/runs/26507735997"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.2-1",
      "date": "2026-05-27T11:19:07.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "9c22f038950802a422fde7bdce353bcbc32eb957",
      "fileid": "9a0a4fec1fc4cc6391996f02a8c727a218d322ae131b5506b6f98fc82017233f",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/retostauffer/actions/runs/26507735997"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2-1",
      "date": "2026-05-27T11:20:06.000Z",
      "arch": "aarch64",
      "commit": "9c22f038950802a422fde7bdce353bcbc32eb957",
      "fileid": "386ef9fbc497976304a66c409111c9bd8465b7bde882a50ebc5b87aebcc4e423",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/retostauffer/actions/runs/26507735997"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.2-1",
      "date": "2026-05-27T11:20:44.000Z",
      "arch": "x86_64",
      "commit": "9c22f038950802a422fde7bdce353bcbc32eb957",
      "fileid": "7bfaacde20dd4ae963aab8a5bdd901bba0b7f4cfbf2e98ce0cd59b40414c2f16",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/retostauffer/actions/runs/26507735997"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.2-1",
      "date": "2026-05-27T11:20:04.000Z",
      "arch": "aarch64",
      "commit": "9c22f038950802a422fde7bdce353bcbc32eb957",
      "fileid": "7d2743875fb3f2e0bae049dd5b023d3d2ed6124d71551ee2e2da67bf96df5f5f",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/retostauffer/actions/runs/26507735997"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.2-1",
      "date": "2026-05-27T11:21:56.000Z",
      "arch": "x86_64",
      "commit": "9c22f038950802a422fde7bdce353bcbc32eb957",
      "fileid": "ce9b81381ea91ca759121ad4771d0d77b5970ca1bf9dc2ac3170bcac15942f99",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/retostauffer/actions/runs/26507735997"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.2-1",
      "date": "2026-05-27T11:19:06.000Z",
      "arch": "emscripten",
      "commit": "9c22f038950802a422fde7bdce353bcbc32eb957",
      "fileid": "6a42d78aa6d1663283b0a9f560ce85bd2f8e9c7fd8a422670d842d6873c6b56f",
      "status": "success",
      "buildurl": "https://github.com/r-universe/retostauffer/actions/runs/26507735997"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.2-1",
      "date": "2026-05-27T11:18:55.000Z",
      "arch": "x86_64",
      "commit": "9c22f038950802a422fde7bdce353bcbc32eb957",
      "fileid": "a5b78521ef3823e04b4025250e0870018f91876f4bbbcc709a745ae0f29af125",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/retostauffer/actions/runs/26507735997"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.2-1",
      "date": "2026-05-27T11:18:44.000Z",
      "arch": "x86_64",
      "commit": "9c22f038950802a422fde7bdce353bcbc32eb957",
      "fileid": "122f6408a115372f97d894ac82e0f9f85e919bcddd28428315a7a693349b8f24",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/retostauffer/actions/runs/26507735997"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.2-1",
      "date": "2026-05-27T11:18:39.000Z",
      "arch": "x86_64",
      "commit": "9c22f038950802a422fde7bdce353bcbc32eb957",
      "fileid": "60395d7b7b84f5c35dc6812eaa78e8011a951c94ff482105369b1b836af3cdd9",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/retostauffer/actions/runs/26507735997"
    }
  ]
}